IL_4V8F_246

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_246 not in the Motif Atlas

Homologous match to IL_4LFB_068

Geometric discrepancy: 0.1161

The information below is about IL_4LFB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V8F|1|CA|G|1401
4V8F|1|CA|C|1402
4V8F|1|CA|C|1403
4V8F|1|CA|C|1404
*
4V8F|1|CA|G|1497
4V8F|1|CA|U|1498
4V8F|1|CA|A|1499
4V8F|1|CA|A|1500
4V8F|1|CA|C|1501

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain C1

MRNA

Chain CC

Transfer RNA; tRNA

Chain DA

Large subunit ribosomal RNA; LSU rRNA