IL_4V8F_264

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_264 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0667

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V8F|1|DA|U|239
4V8F|1|DA|G|240
4V8F|1|DA|A|241
4V8F|1|DA|G|242
4V8F|1|DA|U|243
4V8F|1|DA|A|244
4V8F|1|DA|G|245
*
4V8F|1|DA|C|253
4V8F|1|DA|G|254
4V8F|1|DA|A|255
4V8F|1|DA|A|256
4V8F|1|DA|A|257
4V8F|1|DA|G|258

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain D8

50S ribosomal protein L35

Chain DO

50S ribosomal protein L15