IL_4V8F_265

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCGUG*CC

Length

7 nucleotides

Bulged bases

4V8F|1|DA|U|271|||C

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_265 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.1797

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V8F|1|DA|G|271
4V8F|1|DA|C|271|||A
4V8F|1|DA|G|271|||B
4V8F|1|DA|U|271|||C
4V8F|1|DA|G|272
*
4V8F|1|DA|C|365
4V8F|1|DA|C|366

Current chains

Chain DA

RNA (2912-MER)

Nearby chains