IL_4V8F_274
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CCU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8F_274 not in the Motif Atlas
- Homologous match to IL_7RQB_015
- Geometric discrepancy: 0.0782
- The information below is about IL_7RQB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86319.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 270
Unit IDs
4V8F|1|DA|C|564
4V8F|1|DA|C|565
4V8F|1|DA|U|566
*
4V8F|1|DA|A|575
4V8F|1|DA|U|576
4V8F|1|DA|G|577
Current chains
- Chain DA
- RNA (2912-MER)
Nearby chains
- Chain D1
- 50S ribosomal protein L20
- Chain D2
- 50S ribosomal protein L21
- Chain D5
- 50S ribosomal protein L32
- Chain DO
- 50S ribosomal protein L15
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