3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GGC*GCC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: GGC,GCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8F_276 not in the Motif Atlas
Geometric match to IL_3GM7_006
Geometric discrepancy: 0.1869
The information below is about IL_3GM7_006
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

4V8F|1|DA|G|654|||C
4V8F|1|DA|G|654|||D
4V8F|1|DA|C|654|||E
*
4V8F|1|DA|G|654|||P
4V8F|1|DA|C|654|||Q
4V8F|1|DA|C|654|||R

Current chains

Chain DA
RNA (2912-MER)

Nearby chains

Chain DO
50S ribosomal protein L15

Coloring options:


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