IL_4V8F_277
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CCG*CUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8F_277 not in the Motif Atlas
- Geometric match to IL_5J7L_259
- Geometric discrepancy: 0.096
- The information below is about IL_5J7L_259
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
4V8F|1|DA|C|672
4V8F|1|DA|C|673
4V8F|1|DA|G|674
*
4V8F|1|DA|C|806
4V8F|1|DA|U|807
4V8F|1|DA|G|808
Current chains
- Chain DA
- RNA (2912-MER)
Nearby chains
- Chain DF
- 50S ribosomal protein L4
- Chain DO
- 50S ribosomal protein L15
Coloring options: