IL_4V8F_290

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_290 not in the Motif Atlas

Homologous match to IL_7RQB_029

Geometric discrepancy: 0.1272

The information below is about IL_7RQB_029

Detailed Annotation

C-loop with bulged stacked A's

Broad Annotation

C-loop

Motif group

IL_02509.1

Basepair signature

cWW-tSW-cWS-cSH-tWH-R-R-cWW

Number of instances in this motif group

5

Unit IDs

4V8F|1|DA|G|864
4V8F|1|DA|C|865
4V8F|1|DA|A|866
4V8F|1|DA|C|867
4V8F|1|DA|U|868
*
4V8F|1|DA|A|909
4V8F|1|DA|A|910
4V8F|1|DA|A|911
4V8F|1|DA|C|912

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DP

50S ribosomal protein L16

Chain DV

50S ribosomal protein L25