IL_4V8F_295

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAAGGC*GCCGAAG

Length

14 nucleotides

Bulged bases

4V8F|1|DA|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8F|1|DA|C|998
4V8F|1|DA|U|999
4V8F|1|DA|A|1000
4V8F|1|DA|A|1001
4V8F|1|DA|G|1002
4V8F|1|DA|G|1003
4V8F|1|DA|C|1004
*
4V8F|1|DA|G|1151
4V8F|1|DA|C|1152
4V8F|1|DA|C|1153
4V8F|1|DA|G|1154
4V8F|1|DA|A|1155
4V8F|1|DA|A|1156
4V8F|1|DA|G|1157

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain D1

50S ribosomal protein L20

Chain D2

50S ribosomal protein L21

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DX

50S ribosomal protein L30