IL_4V8F_298

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

4V8F|1|DA|U|1142, 4V8F|1|DA|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_298 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1517

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4V8F|1|DA|C|1018
4V8F|1|DA|U|1019
4V8F|1|DA|A|1020
4V8F|1|DA|A|1021
4V8F|1|DA|G|1022
4V8F|1|DA|U|1023
4V8F|1|DA|G|1024
*
4V8F|1|DA|C|1140
4V8F|1|DA|U|1141
4V8F|1|DA|U|1142
4V8F|1|DA|A|1142|||A
4V8F|1|DA|A|1143
4V8F|1|DA|G|1144

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DH

50S ribosomal protein L6

Chain DM

50S ribosomal protein L13