IL_4V8F_301

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4V8F|1|DA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_301 not in the Motif Atlas

Homologous match to IL_7RQB_042

Geometric discrepancy: 0.3927

The information below is about IL_7RQB_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.4

Basepair signature

cWW-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4V8F|1|DA|C|1043
4V8F|1|DA|G|1044
4V8F|1|DA|A|1045
4V8F|1|DA|A|1046
4V8F|1|DA|G|1047
4V8F|1|DA|A|1048
4V8F|1|DA|C|1049
4V8F|1|DA|A|1050
4V8F|1|DA|G|1051
*
4V8F|1|DA|U|1108
4V8F|1|DA|C|1109
4V8F|1|DA|G|1110
4V8F|1|DA|A|1111
4V8F|1|DA|G|1112

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DH

50S ribosomal protein L6