IL_4V8F_304

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGG,CCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_304 not in the Motif Atlas

Homologous match to IL_4WF9_043

Geometric discrepancy: 0.4465

The information below is about IL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8F|1|DA|G|1169
4V8F|1|DA|G|1170
4V8F|1|DA|G|1171
*
4V8F|1|DA|C|1178
4V8F|1|DA|C|1179
4V8F|1|DA|C|1180

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain D2

50S ribosomal protein L21