3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CGU*AGUG
Length
7 nucleotides
Bulged bases
4V8F|1|DA|G|1248
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8F_305 not in the Motif Atlas
Homologous match to IL_7RQB_045
Geometric discrepancy: 0.077
The information below is about IL_7RQB_045
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_52767.4
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
28

Unit IDs

4V8F|1|DA|C|1196
4V8F|1|DA|G|1197
4V8F|1|DA|U|1198
*
4V8F|1|DA|A|1247
4V8F|1|DA|G|1248
4V8F|1|DA|U|1249
4V8F|1|DA|G|1250

Current chains

Chain DA
RNA (2912-MER)

Nearby chains

Chain D1
50S ribosomal protein L20
Chain DF
50S ribosomal protein L4
Chain DO
50S ribosomal protein L15

Coloring options:


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