IL_4V8F_305

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

4V8F|1|DA|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_305 not in the Motif Atlas

Homologous match to IL_7RQB_045

Geometric discrepancy: 0.077

The information below is about IL_7RQB_045

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V8F|1|DA|C|1196
4V8F|1|DA|G|1197
4V8F|1|DA|U|1198
*
4V8F|1|DA|A|1247
4V8F|1|DA|G|1248
4V8F|1|DA|U|1249
4V8F|1|DA|G|1250

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain D1

50S ribosomal protein L20

Chain DF

50S ribosomal protein L4

Chain DO

50S ribosomal protein L15