IL_4V8F_305
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGU*AGUG
- Length
- 7 nucleotides
- Bulged bases
- 4V8F|1|DA|G|1248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8F_305 not in the Motif Atlas
- Homologous match to IL_7RQB_045
- Geometric discrepancy: 0.077
- The information below is about IL_7RQB_045
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_52767.4
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 28
Unit IDs
4V8F|1|DA|C|1196
4V8F|1|DA|G|1197
4V8F|1|DA|U|1198
*
4V8F|1|DA|A|1247
4V8F|1|DA|G|1248
4V8F|1|DA|U|1249
4V8F|1|DA|G|1250
Current chains
- Chain DA
- RNA (2912-MER)
Nearby chains
- Chain D1
- 50S ribosomal protein L20
- Chain DF
- 50S ribosomal protein L4
- Chain DO
- 50S ribosomal protein L15
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