IL_4V8F_337

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_337 not in the Motif Atlas

Geometric match to IL_7RQB_076

Geometric discrepancy: 0.0682

The information below is about IL_7RQB_076

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_59677.2

Basepair signature

cWW-cWW

Number of instances in this motif group

19

Unit IDs

4V8F|1|DA|G|1933
4V8F|1|DA|C|1934
*
4V8F|1|DA|G|1964
4V8F|1|DA|C|1965
4V8F|1|DA|A|1966
4V8F|1|DA|C|1967

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CB

TRNA-TYR

Chain CC

Transfer RNA; tRNA