IL_4V8F_346

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4V8F|1|DA|G|2112, 4V8F|1|DA|U|2113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_346 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.2673

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

4V8F|1|DA|G|2110
4V8F|1|DA|C|2111
4V8F|1|DA|G|2112
4V8F|1|DA|U|2113
4V8F|1|DA|A|2114
4V8F|1|DA|G|2115
4V8F|1|DA|G|2116
4V8F|1|DA|A|2117
4V8F|1|DA|U|2118
4V8F|1|DA|A|2119
4V8F|1|DA|G|2120
*
4V8F|1|DA|C|2178
4V8F|1|DA|C|2179

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain CD

TRNA-TYR