IL_4V8F_350

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_350 not in the Motif Atlas

Homologous match to IL_7RQB_089

Geometric discrepancy: 0.085

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

4V8F|1|DA|C|2350
4V8F|1|DA|G|2351
4V8F|1|DA|A|2352
4V8F|1|DA|G|2353
*
4V8F|1|DA|C|2364
4V8F|1|DA|G|2365
4V8F|1|DA|A|2366
4V8F|1|DA|G|2367

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain D3

50S ribosomal protein L27

Chain D8

50S ribosomal protein L35

Chain DQ

50S ribosomal protein L18