IL_4V8F_360

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

4V8F|1|DA|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_360 not in the Motif Atlas

Homologous match to IL_7RQB_099

Geometric discrepancy: 0.0987

The information below is about IL_7RQB_099

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.3

Basepair signature

cWW-tSH-cWW

Number of instances in this motif group

10

Unit IDs

4V8F|1|DA|U|2522
4V8F|1|DA|G|2523
*
4V8F|1|DA|C|2540
4V8F|1|DA|A|2541
4V8F|1|DA|A|2542
4V8F|1|DA|G|2543

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DM

50S ribosomal protein L13