IL_4V8F_377
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GG*UAC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8F_377 not in the Motif Atlas
- Homologous match to IL_9DFE_008
- Geometric discrepancy: 0.1698
- The information below is about IL_9DFE_008
- Detailed Annotation
- Major groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_48076.6
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 41
Unit IDs
4V8F|1|AA|G|273
4V8F|1|AA|G|273|||A
*
4V8F|1|AA|U|363|||E
4V8F|1|AA|A|363|||F
4V8F|1|AA|C|364
Current chains
- Chain AA
- RNA (2912-MER)
Nearby chains
No other chains within 10ÅColoring options: