3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GG*UAC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8F_377 not in the Motif Atlas
Homologous match to IL_9DFE_008
Geometric discrepancy: 0.1698
The information below is about IL_9DFE_008
Detailed Annotation
Major groove platform
Broad Annotation
No text annotation
Motif group
IL_48076.6
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
41

Unit IDs

4V8F|1|AA|G|273
4V8F|1|AA|G|273|||A
*
4V8F|1|AA|U|363|||E
4V8F|1|AA|A|363|||F
4V8F|1|AA|C|364

Current chains

Chain AA
RNA (2912-MER)

Nearby chains

No other chains within 10Å

Coloring options:


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