IL_4V8F_381

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_381 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0604

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

4V8F|1|AA|G|1666
4V8F|1|AA|G|1667
4V8F|1|AA|A|1668
4V8F|1|AA|A|1669
4V8F|1|AA|C|1670
4V8F|1|AA|U|1671
4V8F|1|AA|C|1672
4V8F|1|AA|U|1673
4V8F|1|AA|G|1674
*
4V8F|1|AA|C|1990
4V8F|1|AA|U|1991
4V8F|1|AA|G|1992
4V8F|1|AA|U|1993
4V8F|1|AA|C|1994

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AN

50S ribosomal protein L14