IL_4V8F_388

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGAAAGAC*GGGGAGC

Length

16 nucleotides

Bulged bases

4V8F|1|CA|A|632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8F|1|CA|G|604
4V8F|1|CA|U|605
4V8F|1|CA|G|606
4V8F|1|CA|A|607
4V8F|1|CA|A|608
4V8F|1|CA|A|609
4V8F|1|CA|G|610
4V8F|1|CA|A|611
4V8F|1|CA|C|612
*
4V8F|1|CA|G|628
4V8F|1|CA|G|629
4V8F|1|CA|G|630
4V8F|1|CA|G|631
4V8F|1|CA|A|632
4V8F|1|CA|G|633
4V8F|1|CA|C|634

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CG

30S RIBOSOMAL PROTEIN S4

Chain CK

30S RIBOSOMAL PROTEIN S8

Chain CS

30S RIBOSOMAL PROTEIN S16

Chain CT

30S RIBOSOMAL PROTEIN S17