IL_4V8F_391

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUAGGGGG*CCUACCAAAC

Length

19 nucleotides

Bulged bases

4V8F|1|DA|U|877, 4V8F|1|DA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8F|1|DA|G|875
4V8F|1|DA|C|876
4V8F|1|DA|U|877
4V8F|1|DA|A|878
4V8F|1|DA|G|879
4V8F|1|DA|G|880
4V8F|1|DA|G|881
4V8F|1|DA|G|882
4V8F|1|DA|G|883
*
4V8F|1|DA|C|893
4V8F|1|DA|C|894
4V8F|1|DA|U|895
4V8F|1|DA|A|896
4V8F|1|DA|C|897
4V8F|1|DA|C|898
4V8F|1|DA|A|899
4V8F|1|DA|A|900
4V8F|1|DA|A|901
4V8F|1|DA|C|902

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain CB

TRNA-TYR

Chain DP

50S ribosomal protein L16

Chain DV

50S ribosomal protein L25