3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GCUAG*CAAAC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8F_395 not in the Motif Atlas
Homologous match to IL_5J7L_274
Geometric discrepancy: 0.3753
The information below is about IL_5J7L_274
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

4V8F|1|AA|G|875
4V8F|1|AA|C|876
4V8F|1|AA|U|877
4V8F|1|AA|A|878
4V8F|1|AA|G|879
*
4V8F|1|AA|C|898
4V8F|1|AA|A|899
4V8F|1|AA|A|900
4V8F|1|AA|A|901
4V8F|1|AA|C|902

Current chains

Chain AA
RNA (2912-MER)

Nearby chains

Chain AP
50S ribosomal protein L16
Chain AV
50S ribosomal protein L25
Chain BB
TRNA-TYR

Coloring options:


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