IL_4V8G_039

3D structure

PDB id

4V8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RMF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUG,CAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8G_039 not in the Motif Atlas

Geometric match to IL_5J7L_326

Geometric discrepancy: 0.2732

The information below is about IL_5J7L_326

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4V8G|1|AA|G|951
4V8G|1|AA|U|952
4V8G|1|AA|G|953
*
4V8G|1|AA|C|1228
4V8G|1|AA|A|1229
4V8G|1|AA|C|1230

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AM

30S Ribosomal Protein S13

Chain AS

30S Ribosomal Protein S19