IL_4V8G_048

3D structure

PDB id

4V8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RMF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGGC*GUCAGCA

Length

11 nucleotides

Bulged bases

4V8G|1|AA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8G_048 not in the Motif Atlas

Geometric match to IL_8CRE_454

Geometric discrepancy: 0.3347

The information below is about IL_8CRE_454

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41257.1

Basepair signature

cWW-L-tHS-L-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V8G|1|AA|U|1056
4V8G|1|AA|G|1057
4V8G|1|AA|G|1058
4V8G|1|AA|C|1059
*
4V8G|1|AA|G|1198
4V8G|1|AA|U|1199
4V8G|1|AA|C|1200
4V8G|1|AA|A|1201
4V8G|1|AA|G|1202
4V8G|1|AA|C|1203
4V8G|1|AA|A|1204

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AC

30S Ribosomal Protein S3

Chain AJ

30S Ribosomal Protein S10

Chain AN

30S Ribosomal Protein S14