3D structure

PDB id
4V8G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of RMF bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CCC*GGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: CCC,GGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8G_053 not in the Motif Atlas
Geometric match to IL_1ZZ5_002
Geometric discrepancy: 0.2736
The information below is about IL_1ZZ5_002
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_01003.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
174

Unit IDs

4V8G|1|AA|C|1161
4V8G|1|AA|C|1162
4V8G|1|AA|C|1163
*
4V8G|1|AA|G|1173
4V8G|1|AA|G|1174
4V8G|1|AA|G|1175

Current chains

Chain AA
16S Ribosomal RNA

Nearby chains

Chain AB
30S Ribosomal Protein S2

Coloring options:


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