IL_4V8G_058

3D structure

PDB id

4V8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RMF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUC,GAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8G_058 not in the Motif Atlas

Geometric match to IL_3BNT_006

Geometric discrepancy: 0.2023

The information below is about IL_3BNT_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

4V8G|1|AA|G|1312
4V8G|1|AA|U|1313
4V8G|1|AA|C|1314
*
4V8G|1|AA|G|1323
4V8G|1|AA|A|1324
4V8G|1|AA|C|1325

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AM

30S Ribosomal Protein S13

Chain AS

30S Ribosomal Protein S19

Chain AU

30S Ribosomal Protein THX