IL_4V8G_200

3D structure

PDB id

4V8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RMF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8G_200 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.1649

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V8G|1|CA|G|446
4V8G|1|CA|G|447
4V8G|1|CA|A|448
4V8G|1|CA|C|449
4V8G|1|CA|G|450
*
4V8G|1|CA|C|483
4V8G|1|CA|G|484
4V8G|1|CA|G|485
4V8G|1|CA|U|486
4V8G|1|CA|A|487
4V8G|1|CA|C|488

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CD

30S Ribosomal Protein S4

Chain CP

30S Ribosomal Protein S16