IL_4V8G_226

3D structure

PDB id

4V8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RMF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

4V8G|1|CA|U|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8G_226 not in the Motif Atlas

Homologous match to IL_4LFB_046

Geometric discrepancy: 0.2187

The information below is about IL_4LFB_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V8G|1|CA|C|1060
4V8G|1|CA|G|1061
*
4V8G|1|CA|C|1195
4V8G|1|CA|U|1196
4V8G|1|CA|G|1197

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CC

30S Ribosomal Protein S3

Chain CE

30S Ribosomal Protein S5

Chain CI

30S Ribosomal Protein S9

Chain CJ

30S Ribosomal Protein S10

Chain CN

30S Ribosomal Protein S14