IL_4V8G_249

3D structure

PDB id

4V8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RMF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

4V8G|1|DA|G|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8G_249 not in the Motif Atlas

Homologous match to IL_7RQB_004

Geometric discrepancy: 0.0616

The information below is about IL_7RQB_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.2

Basepair signature

cWW-tSS-L-tSH-L-R-R-cWW-L

Number of instances in this motif group

18

Unit IDs

4V8G|1|DA|G|81
4V8G|1|DA|G|82
4V8G|1|DA|G|83
4V8G|1|DA|A|84
4V8G|1|DA|G|85
*
4V8G|1|DA|C|97
4V8G|1|DA|G|98
4V8G|1|DA|U|99
4V8G|1|DA|G|100
4V8G|1|DA|G|102
4V8G|1|DA|A|103
4V8G|1|DA|U|104
4V8G|1|DA|C|105

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D2

50S Ribosomal Protein L29

Chain DY

50S Ribosomal Protein L24