IL_4V8G_368
3D structure
- PDB id
- 4V8G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of RMF bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CCGUC*GUCUGG
- Length
- 11 nucleotides
- Bulged bases
- 4V8G|1|AA|C|1195, 4V8G|1|AA|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8G_368 not in the Motif Atlas
- Geometric match to IL_8S95_002
- Geometric discrepancy: 0.3954
- The information below is about IL_8S95_002
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
4V8G|1|AA|C|1059
4V8G|1|AA|C|1060
4V8G|1|AA|G|1061
4V8G|1|AA|U|1062
4V8G|1|AA|C|1063
*
4V8G|1|AA|G|1193
4V8G|1|AA|U|1194
4V8G|1|AA|C|1195
4V8G|1|AA|U|1196
4V8G|1|AA|G|1197
4V8G|1|AA|G|1198
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AC
- 30S Ribosomal Protein S3
- Chain AE
- 30S Ribosomal Protein S5
- Chain AI
- 30S Ribosomal Protein S9
- Chain AJ
- 30S Ribosomal Protein S10
- Chain AN
- 30S Ribosomal Protein S14
Coloring options: