IL_4V8G_382

3D structure

PDB id

4V8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RMF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGG*CUAC

Length

7 nucleotides

Bulged bases

4V8G|1|DA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8G_382 not in the Motif Atlas

Geometric match to IL_4V88_507

Geometric discrepancy: 0.2235

The information below is about IL_4V88_507

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V8G|1|DA|G|880
4V8G|1|DA|G|881
4V8G|1|DA|G|882
*
4V8G|1|DA|C|894
4V8G|1|DA|U|895
4V8G|1|DA|A|896
4V8G|1|DA|C|897

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DQ

50S Ribosomal Protein L16

Chain DZ

50S Ribosomal Protein L25