IL_4V8H_040

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAG,CUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8H_040 not in the Motif Atlas

Geometric match to IL_5TBW_016

Geometric discrepancy: 0.1835

The information below is about IL_5TBW_016

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V8H|1|AA|C|985
4V8H|1|AA|A|986
4V8H|1|AA|G|987
*
4V8H|1|AA|C|1218
4V8H|1|AA|U|1219
4V8H|1|AA|G|1220

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AN

30S Ribosomal Protein S14

Chain AS

30S Ribosomal Protein S19