IL_4V8H_056

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCG,CGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8H_056 not in the Motif Atlas

Geometric match to IL_6CZR_122

Geometric discrepancy: 0.2233

The information below is about IL_6CZR_122

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

183

Unit IDs

4V8H|1|AA|C|1263
4V8H|1|AA|C|1264
4V8H|1|AA|G|1265
*
4V8H|1|AA|C|1270
4V8H|1|AA|G|1271
4V8H|1|AA|G|1272

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AS

30S Ribosomal Protein S19

Chain AU

30S Ribosomal Protein THX