3D structure

PDB id
4V8H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of HPF bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUACC*GAUG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8H_188 not in the Motif Atlas
Homologous match to IL_4LFB_008
Geometric discrepancy: 0.1065
The information below is about IL_4LFB_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_64231.5
Basepair signature
cWW-cWW-L-R-L-cWW
Number of instances in this motif group
11

Unit IDs

4V8H|1|CA|C|132
4V8H|1|CA|U|133
4V8H|1|CA|A|134
4V8H|1|CA|C|135
4V8H|1|CA|C|136
*
4V8H|1|CA|G|227
4V8H|1|CA|A|228
4V8H|1|CA|U|229
4V8H|1|CA|G|230

Current chains

Chain CA
16S Ribosomal RNA

Nearby chains

Chain CP
30S Ribosomal Protein S16
Chain CT
30S Ribosomal Protein S20

Coloring options:


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