IL_4V8H_223

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGC*GCC

Length

7 nucleotides

Bulged bases

4V8H|1|CA|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8H_223 not in the Motif Atlas

Geometric match to IL_4E48_001

Geometric discrepancy: 0.1881

The information below is about IL_4E48_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V8H|1|CA|G|1048
4V8H|1|CA|U|1049
4V8H|1|CA|G|1050
4V8H|1|CA|C|1051
*
4V8H|1|CA|G|1207
4V8H|1|CA|C|1208
4V8H|1|CA|C|1209

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CC

30S Ribosomal Protein S3

Chain CN

30S Ribosomal Protein S14