IL_4V8H_224

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

4V8H|1|CA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8H_224 not in the Motif Atlas

Homologous match to IL_6CZR_154

Geometric discrepancy: 0.1681

The information below is about IL_6CZR_154

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76319.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

4V8H|1|CA|U|1052
4V8H|1|CA|G|1053
4V8H|1|CA|C|1054
4V8H|1|CA|A|1055
4V8H|1|CA|U|1056
*
4V8H|1|CA|A|1204
4V8H|1|CA|U|1205
4V8H|1|CA|G|1206

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CC

30S Ribosomal Protein S3

Chain CN

30S Ribosomal Protein S14

Chain CX

Probable sigma(54) modulation protein