IL_4V8H_358

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACAACC*GGCUAAUC

Length

15 nucleotides

Bulged bases

4V8H|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8H_358 not in the Motif Atlas

Homologous match to IL_6CZR_121

Geometric discrepancy: 0.1647

The information below is about IL_6CZR_121

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.5

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4V8H|1|AA|G|148
4V8H|1|AA|A|149
4V8H|1|AA|C|150
4V8H|1|AA|A|151
4V8H|1|AA|A|152
4V8H|1|AA|C|153
4V8H|1|AA|C|154
*
4V8H|1|AA|G|167
4V8H|1|AA|G|168
4V8H|1|AA|C|169
4V8H|1|AA|U|170
4V8H|1|AA|A|171
4V8H|1|AA|A|172
4V8H|1|AA|U|173
4V8H|1|AA|C|174

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AT

30S Ribosomal Protein S20