IL_4V8H_382

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAACCC*GGGGUGCCCCGCGAGGGGAGC

Length

27 nucleotides

Bulged bases

4V8H|1|CA|A|1004, 4V8H|1|CA|A|1005, 4V8H|1|CA|U|1025, 4V8H|1|CA|G|1026, 4V8H|1|CA|C|1027

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8H|1|CA|G|1003
4V8H|1|CA|A|1004
4V8H|1|CA|A|1005
4V8H|1|CA|C|1006
4V8H|1|CA|C|1007
4V8H|1|CA|C|1008
*
4V8H|1|CA|G|1021
4V8H|1|CA|G|1022
4V8H|1|CA|G|1023
4V8H|1|CA|G|1024
4V8H|1|CA|U|1025
4V8H|1|CA|G|1026
4V8H|1|CA|C|1027
4V8H|1|CA|C|1028
4V8H|1|CA|C|1029
4V8H|1|CA|C|1030
4V8H|1|CA|G|1030|||A
4V8H|1|CA|C|1030|||B
4V8H|1|CA|G|1030|||C
4V8H|1|CA|A|1030|||D
4V8H|1|CA|G|1031
4V8H|1|CA|G|1032
4V8H|1|CA|G|1033
4V8H|1|CA|G|1034
4V8H|1|CA|A|1035
4V8H|1|CA|G|1036
4V8H|1|CA|C|1037

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains