IL_4V8I_070
3D structure
- PDB id
- 4V8I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of YfiA bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8I_070 not in the Motif Atlas
- Geometric match to IL_7RQB_006
- Geometric discrepancy: 0.0279
- The information below is about IL_7RQB_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4V8I|1|BA|G|188
4V8I|1|BA|G|189
4V8I|1|BA|A|190
4V8I|1|BA|A|191
4V8I|1|BA|C|192
4V8I|1|BA|U|193
4V8I|1|BA|G|194
*
4V8I|1|BA|C|201
4V8I|1|BA|U|202
4V8I|1|BA|C|203
4V8I|1|BA|A|204
4V8I|1|BA|G|205
4V8I|1|BA|U|206
4V8I|1|BA|A|207
4V8I|1|BA|C|208
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B1
- 50S Ribosomal Protein L28
- Chain B7
- 50S Ribosomal Protein L34
- Chain B8
- 50S Ribosomal Protein L35
- Chain BP
- 50S Ribosomal Protein L15
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