IL_4V8I_193

3D structure

PDB id

4V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YfiA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8I_193 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1007

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V8I|1|CA|G|409
4V8I|1|CA|G|410
4V8I|1|CA|A|411
4V8I|1|CA|A|412
4V8I|1|CA|G|413
4V8I|1|CA|A|414
4V8I|1|CA|A|415
4V8I|1|CA|G|416
*
4V8I|1|CA|U|427
4V8I|1|CA|G|428
4V8I|1|CA|U|429
4V8I|1|CA|A|430
4V8I|1|CA|A|431
4V8I|1|CA|A|432
4V8I|1|CA|C|433

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CD

30S Ribosomal Protein S4