IL_4V8I_221
3D structure
- PDB id
- 4V8I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of YfiA bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GUUGC*GGCACUC
- Length
- 12 nucleotides
- Bulged bases
- 4V8I|1|CA|U|1125
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8I_221 not in the Motif Atlas
- Homologous match to IL_4LFB_048
- Geometric discrepancy: 0.2104
- The information below is about IL_4LFB_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85222.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 1
Unit IDs
4V8I|1|CA|G|1124
4V8I|1|CA|U|1125
4V8I|1|CA|U|1126
4V8I|1|CA|G|1127
4V8I|1|CA|C|1128
*
4V8I|1|CA|G|1143
4V8I|1|CA|G|1144
4V8I|1|CA|C|1145
4V8I|1|CA|A|1146
4V8I|1|CA|C|1147
4V8I|1|CA|U|1148
4V8I|1|CA|C|1149
Current chains
- Chain CA
- 16S Ribosomal RNA
Nearby chains
- Chain CI
- 30S Ribosomal Protein S9
- Chain CJ
- 30S Ribosomal Protein S10
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