IL_4V8N_021

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_021 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.0988

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4V8N|1|AA|C|504
4V8N|1|AA|G|505
4V8N|1|AA|G|506
4V8N|1|AA|C|507
4V8N|1|AA|C|508
4V8N|1|AA|A|509
4V8N|1|AA|A|510
4V8N|1|AA|C|511
*
4V8N|1|AA|G|540
4V8N|1|AA|G|541

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AD

30S RIBOSOMAL PROTEIN S4

Chain AL

30S RIBOSOMAL PROTEIN S12