IL_4V8N_025

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_025 not in the Motif Atlas

Homologous match to IL_4LFB_024

Geometric discrepancy: 0.13

The information below is about IL_4LFB_024

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

4V8N|1|AA|G|594
4V8N|1|AA|G|595
4V8N|1|AA|C|596
*
4V8N|1|AA|G|644
4V8N|1|AA|C|645

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AH

30S RIBOSOMAL PROTEIN S8

Chain AQ

30S RIBOSOMAL PROTEIN S17