IL_4V8N_055

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGAUUG*CAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8N|1|AA|C|1303
4V8N|1|AA|G|1304
4V8N|1|AA|G|1305
4V8N|1|AA|A|1306
4V8N|1|AA|U|1307
4V8N|1|AA|U|1308
4V8N|1|AA|G|1309
*
4V8N|1|AA|C|1328
4V8N|1|AA|A|1329
4V8N|1|AA|U|1330
4V8N|1|AA|G|1331
4V8N|1|AA|A|1332
4V8N|1|AA|A|1333
4V8N|1|AA|G|1334

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AM

30S RIBOSOMAL PROTEIN S13

Chain AU

30S RIBOSOMAL PROTEIN THX