IL_4V8N_062

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_062 not in the Motif Atlas

Geometric match to IL_4LFB_062

Geometric discrepancy: 0.0874

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

4V8N|1|AA|C|1431
4V8N|1|AA|G|1432
4V8N|1|AA|A|1433
4V8N|1|AA|A|1434
4V8N|1|AA|G|1435
*
4V8N|1|AA|C|1466
4V8N|1|AA|G|1467
4V8N|1|AA|A|1468
4V8N|1|AA|G|1469

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AT

30S RIBOSOMAL PROTEIN S20

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BT

50S RIBOSOMAL PROTEIN L19