IL_4V8N_065

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCC,GGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_065 not in the Motif Atlas

Homologous match to IL_5EL4_358

Geometric discrepancy: 0.4398

The information below is about IL_5EL4_358

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8N|1|AV|G|3
4V8N|1|AV|C|4
4V8N|1|AV|C|5
*
4V8N|1|AV|G|70
4V8N|1|AV|G|71
4V8N|1|AV|C|72

Current chains

Chain AV

E-SITE TRNA ILE2 AGMATIDINE OR P-SITE TRNA ILE2 AGMATIDINE

Nearby chains

Chain AY

Transfer RNA; tRNA

Chain B0

50S RIBOSOMAL PROTEIN L27

Chain BA

Large subunit ribosomal RNA; LSU rRNA