IL_4V8N_090

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUG*CUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_090 not in the Motif Atlas

Homologous match to IL_7A0S_019

Geometric discrepancy: 0.0845

The information below is about IL_7A0S_019

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

4V8N|1|BA|G|738
4V8N|1|BA|G|739
4V8N|1|BA|U|740
4V8N|1|BA|G|741
*
4V8N|1|BA|C|756
4V8N|1|BA|U|757
4V8N|1|BA|C|758

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains