IL_4V8N_107
3D structure
- PDB id
- 4V8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAGUG*CUUAAG
- Length
- 13 nucleotides
- Bulged bases
- 4V8N|1|BA|U|1142, 4V8N|1|BA|A|1143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8N_107 not in the Motif Atlas
- Geometric match to IL_4WF9_039
- Geometric discrepancy: 0.1052
- The information below is about IL_4WF9_039
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.5
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 5
Unit IDs
4V8N|1|BA|C|1018
4V8N|1|BA|U|1019
4V8N|1|BA|A|1020
4V8N|1|BA|A|1021
4V8N|1|BA|G|1022
4V8N|1|BA|U|1023
4V8N|1|BA|G|1024
*
4V8N|1|BA|C|1140
4V8N|1|BA|U|1141
4V8N|1|BA|U|1142
4V8N|1|BA|A|1142|||A
4V8N|1|BA|A|1143
4V8N|1|BA|G|1144
Current chains
- Chain BA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B9
- 50S RIBOSOMAL PROTEIN L36
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain BH
- 50S RIBOSOMAL PROTEIN L6
- Chain BN
- 50S RIBOSOMAL PROTEIN L13
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