IL_4V8N_111

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

4V8N|1|BA|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_111 not in the Motif Atlas

Homologous match to IL_7RQB_045

Geometric discrepancy: 0.0734

The information below is about IL_7RQB_045

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V8N|1|BA|C|1196
4V8N|1|BA|G|1197
4V8N|1|BA|U|1198
*
4V8N|1|BA|A|1247
4V8N|1|BA|G|1248
4V8N|1|BA|U|1249
4V8N|1|BA|G|1250

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BP

50S RIBOSOMAL PROTEIN L15

Chain BU

50S RIBOSOMAL PROTEIN L20