IL_4V8N_119

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_119 not in the Motif Atlas

Homologous match to IL_4WF9_052

Geometric discrepancy: 0.2182

The information below is about IL_4WF9_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V8N|1|BA|U|1357
4V8N|1|BA|G|1358
4V8N|1|BA|A|1359
4V8N|1|BA|A|1360
4V8N|1|BA|G|1361
*
4V8N|1|BA|C|1370
4V8N|1|BA|G|1371
4V8N|1|BA|U|1372
4V8N|1|BA|A|1373
4V8N|1|BA|G|1374

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28

Chain B7

50S RIBOSOMAL PROTEIN L34

Chain BD

50S RIBOSOMAL PROTEIN L2