IL_4V8N_153

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGCGUAGGAUAGGU*ACCCUG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8N|1|BA|C|2108
4V8N|1|BA|U|2109
4V8N|1|BA|G|2110
4V8N|1|BA|C|2111
4V8N|1|BA|G|2112
4V8N|1|BA|U|2113
4V8N|1|BA|A|2114
4V8N|1|BA|G|2115
4V8N|1|BA|G|2116
4V8N|1|BA|A|2117
4V8N|1|BA|U|2118
4V8N|1|BA|A|2119
4V8N|1|BA|G|2120
4V8N|1|BA|G|2121
4V8N|1|BA|U|2122
*
4V8N|1|BA|A|2176
4V8N|1|BA|C|2177
4V8N|1|BA|C|2178
4V8N|1|BA|C|2179
4V8N|1|BA|U|2180
4V8N|1|BA|G|2181

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain BC

50S RIBOSOMAL PROTEIN L1

Chain CA

Small subunit ribosomal RNA; SSU rRNA